Publications
| [1] | Aydin Buluç, Jeremy T. Fineman, Matteo Frigo, John R. Gilbert, and Charles E. Leiserson. Parallel sparse matrix-vector and matrix-transpose-vector multiplication using compressed sparse blocks. In Proceedings of the Twenty-First ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), Calgary, Canada, August 2009. [ bib | .pdf ] |
| [2] | Aydin Buluç, John R. Gilbert, and Ceren Budak. Gaussian elimination based algorithms on the GPU. Technical Report UCSB/CS-2008-15, CS Department, University of California, Santa Barbara, November 2008. (submitted to the special issue of Parallel Computing on PMAA'08). [ bib | .pdf ] |
| [3] | B. H. McRae, B. G. Dickson, T. H. Keitt, and V. B. Shah. Using circuit theory to model connectivity in ecology and conservation. Ecology, (In press), 2008. [ bib | .pdf ] |
| [4] | Laura Grigori, John R. Gilbert, and Michel Cosnard. Symbolic and exact structure prediction for sparse gaussian elimination with partial pivoting. SIAM Journal on Matrix Analysis and its Applications (to appear), 2008. [ bib | .pdf ] |
| [5] | Viral B. Shah and Brad McRae. Circuitscape: A tool for landscape ecology. In Proceedings of the 7th Python in Science Conference (SciPy2008), pages 62-65, 2008. [ bib | .pdf ] |
| [6] | J. R. Gilbert, S. Reinhardt, and V. B. Shah. Distributed sparse matrices for very high level languages. Advances in Computers, 72, June 2008. [ bib | .pdf ] |
| [7] | Aydin Buluç and John R. Gilbert. Challenges and Advances in Parallel Sparse Matrix-Matrix Multiplication. In The 37th International Conference on Parallel Processing (ICPP'08), pages 503-510, Portland, Oregon, USA, September 2008. [ bib | DOI | .pdf ] |
| [8] | Lorin Hochstein, Victor R. Basili, Uzi Vishkin, and John R. Gilbert. A pilot study to compare programming effort for two parallel programming models. Journal of Systems and Software (to appear), 2008. [ bib | .pdf ] |
| [9] | Lamia Youseff, Alethea Barbaro, Peterson Trethewey, Bjorn Birnir, and John R. Gilbert. Parallel modeling of fish interaction. In 11th IEEE International Conference on Computational Science and Engineering, pages 234-241, Los Alamitos, CA, USA, 2008. IEEE Computer Society. [ bib | DOI | .pdf ] |
| [10] | Aydin Buluç and John R. Gilbert. On the Representation and Multiplication of Hypersparse Matrices. In IEEE International Parallel and Distributed Processing Symposium (IPDPS 2008), pages 1-11, April 2008. [ bib | DOI | .pdf ] |
| [11] | John R. Gilbert, Steve Reinhardt, and Viral B. Shah. A unified framework for numerical and combinatorial computing. Computing in Sciences and Engineering, 10(2):20-25, Mar/Apr 2008. [ bib | .pdf ] |
| [12] | Viral B. Shah. An Interactive System for Combinatorial Scientific Computing with an Emphasis on Programmer Productivity. PhD thesis, University of California, Santa Barbara, June 2007. [ bib | .pdf ] |
| [13] | John R. Gilbert, Steven Reinhardt, and Viral Shah. An interactive environment to manipulate large graphs. In Proceedings of the 2007 IEEE International Conference on Acoustics, Speech, and Signal Processing, volume 4, pages IV-1201-IV-1204, April 2007. [ bib | .pdf ] |
| [14] | John R. Gilbert, Steve Reinhardt, and Viral B. Shah. High performance graph algorithms from parallel sparse matrices. In Applied Parallel Computing. State of the Art in Scientific Computing. 8th International Workshop, PARA 2006., pages 260-269, 2007. [ bib | .pdf ] |
| [15] | David A. Bader, Kamesh Madduri, John R. Gilbert, Viral Shah, Jeremy Kepner, Theresa Meuse, and Ashok Krishnamurthy. Designing scalable synthetic compact applications for benchmarking high productivity computing systems. Cyberinfrastructure Technology Watch, Nov 2006. [ bib | .pdf ] |
| [16] | Viral Shah and John R. Gilbert. Sparse matrices in Matlab*P: Design and implementation. In High Performance Computing. HiPC 2004., pages 144-155, 2005. [ bib | .pdf ] |
| [17] | David R. Cheng, Alan Edelman, John R. Gilbert, and Viral Shah. A novel parallel sorting algorithm for contemporary architectures. Submitted to ALENEX06, 2006. [ bib | .pdf ] |
| [18] | Andrew Funk, John R. Gilbert, David Mizell, and Viral Shah. Modelling programmer workflows with timed Markov models. Cyber Technology Watch, 2006. [ bib | .pdf ] |
| [19] | Burton Smith, David Mizell, John Gilbert, and Viral Shah. Towards a timed Markov process model of software development. In SE-HPCS '05: Proceedings of the second international workshop on Software engineering for high performance computing system applications, pages 65-67, New York, NY, USA, 2005. ACM Press. [ bib | .pdf ] |