pubs.bib

@article{combblas10,
  author = {Ayd{\i}n Bulu\c{c} and John R. Gilbert},
  title = {The {C}ombinatorial {BLAS}: Design, Implementation, and Applications},
  journal = {The International Journal of High Performance Computing Applications},
  year = {2011},
  abstract = {http://www.cs.ucsb.edu/research/tech_reports/abstract.php?id=1010},
  url = {http://www.cs.ucsb.edu/research/tech_reports/reports/2010-18.pdf},
  doi = {10.1177/1094342011403516}
}
@techreport{spgemm:10,
  author = {Ayd{\i}n Bulu\c{c} and John R. Gilbert},
  institution = {UCSB Computer Science Department},
  title = {Highly Parallel Sparse Matrix-Matrix Multiplication},
  number = {UCSB-CS-2010-10},
  month = {June},
  year = {2010},
  arxiv = {http://arxiv.org/abs/1006.2183}
}
@inproceedings{csb:spaa09,
  author = {Ayd{\i}n Bulu\c{c} and Jeremy T. Fineman and Matteo Frigo and John R. Gilbert and Charles E. Leiserson},
  title = {Parallel Sparse Matrix-Vector and Matrix-Transpose-Vector Multiplication Using Compressed Sparse Blocks},
  booktitle = {Proceedings of the Twenty-First {ACM} Symposium on Parallelism in Algorithms and Architectures ({SPAA})},
  year = {2009},
  month = {August},
  url = {http://gauss.cs.ucsb.edu/publication/csb2009.pdf},
  address = {Calgary, Canada}
}
@article{gpuapsp:2008-15,
  author = {Ayd{\i}n Bulu\c{c} and John R. Gilbert and Ceren Budak},
  title = {Solving path problems on the {GPU}},
  journal = {Parallel Computing},
  volume = {36},
  number = {5-6},
  pages = {241 - 253},
  year = {2010},
  url = {http://gauss.cs.ucsb.edu/publication/parco_apsp.pdf},
  doi = {10.1016/j.parco.2009.12.002},
  note = {(Earlier version "Gaussian Elimination Based Algorithms on the {GPU}" available as UCSB technical report CS-2008-15)}
}
@article{shahecology08,
  title = {Using circuit theory to model connectivity in ecology  and conservation},
  author = {B. H. McRae and B. G. Dickson and T. H. Keitt and V. B. Shah.},
  journal = {Ecology},
  month = {},
  year = {2008},
  volume = {(In press)},
  number = {},
  pages = {},
  url = {http://gauss.cs.ucsb.edu/publication/McRae_et_al_circuit_theory_in_press.pdf}
}
@article{grigorigilbertcosnard08,
  title = {Symbolic and Exact Structure Prediction for Sparse Gaussian Elimination with Partial Pivoting},
  author = {Laura Grigori and John R. Gilbert and Michel Cosnard},
  publisher = {SIAM},
  year = {2008},
  journal = {SIAM Journal on Matrix Analysis and Applications},
  volume = {30},
  number = {4},
  pages = {1520-1545},
  doi = {10.1137/050629343},
  url = {http://gauss.cs.ucsb.edu/publication/GrigoriGilbertCosnardStructHall.pdf}
}
@inproceedings{scipy08,
  title = {Circuitscape: A Tool for Landscape Ecology},
  author = {Viral B. Shah and Brad McRae},
  booktitle = {Proceedings of the 7th Python in Science Conference (SciPy2008)},
  pages = {62--65},
  year = {2008},
  url = {http://gauss.cs.ucsb.edu/publication/Circuitscape_Python_Scipy08.pdf}
}
@article{advances08,
  title = {Distributed Sparse Matrices for Very High Level Languages},
  author = {J. R. Gilbert and S. Reinhardt and V. B. Shah},
  journal = {Advances in Computers},
  volume = {72},
  year = {2008},
  month = {June},
  url = {http://gauss.cs.ucsb.edu/publication/DistributedSparseMatricesVHLL.pdf}
}
@inproceedings{icpp08,
  title = {{Challenges and Advances in Parallel Sparse Matrix-Matrix Multiplication}},
  author = {Ayd{\i}n Bulu\c{c} and John R. Gilbert},
  booktitle = {{The 37th International Conference on Parallel Processing (ICPP'08)}},
  year = {2008},
  month = {September},
  pages = {503-510},
  doi = {10.1109/ICPP.2008.45},
  address = {Portland, Oregon, USA},
  url = {http://gauss.cs.ucsb.edu/publication/Buluc-ParallelMatMat.pdf}
}
@article{prammpi08,
  author = {Lorin Hochstein and Victor R. Basili and Uzi Vishkin and John R. Gilbert},
  title = {A pilot study to compare programming effort for two parallel programming models},
  journal = {Journal of Systems and Software},
  volume = {81},
  number = {11},
  pages = {1920 - 1930},
  year = {2008},
  doi = {DOI: 10.1016/j.jss.2007.12.798},
  url = {http://gauss.cs.ucsb.edu/publication/pram-journal-paper.pdf}
}
@inproceedings{parallelfish08,
  author = {Lamia Youseff and Alethea Barbaro and Peterson Trethewey and Bjorn Birnir and John R. Gilbert},
  title = {Parallel Modeling of Fish Interaction},
  booktitle = {{11th IEEE International Conference on Computational Science and Engineering}},
  year = {2008},
  isbn = {978-0-7695-3193-9},
  pages = {234-241},
  doi = {10.1109/CSE.2008.8},
  publisher = {IEEE Computer Society},
  address = {Los Alamitos, CA, USA},
  url = {http://gauss.cs.ucsb.edu/publication/parallelModelingOfFishInteraction_YBTBG2008.pdf}
}
@inproceedings{hypersparse08,
  author = {Ayd{\i}n Bulu\c{c} and John R. Gilbert},
  title = {{On the Representation and Multiplication of Hypersparse Matrices}},
  booktitle = {{IEEE International Parallel and Distributed Processing Symposium (IPDPS 2008)}},
  month = {April},
  year = {2008},
  pages = {1-11},
  doi = {10.1109/IPDPS.2008.4536313},
  location = {Miami, FL},
  url = {http://gauss.cs.ucsb.edu/publication/hypersparse-ipdps08.pdf}
}
@article{cise08,
  title = {A Unified Framework for Numerical and Combinatorial Computing},
  author = {John R. Gilbert and Steve Reinhardt and Viral B. Shah},
  journal = {Computing in Sciences and Engineering},
  month = {Mar/Apr},
  year = {2008},
  volume = {10},
  number = {2},
  pages = {20--25},
  url = {http://gauss.cs.ucsb.edu/publication/cise-graph.pdf}
}
@phdthesis{shahthesis,
  author = {Viral B. Shah},
  title = {An Interactive System for Combinatorial Scientific Computing with an Emphasis on Programmer Productivity},
  school = {University of California, Santa Barbara},
  year = {2007},
  month = {June},
  url = {http://gauss.cs.ucsb.edu/publication/Shah_thesis.pdf}
}
@inproceedings{icassp07,
  title = {An Interactive Environment to Manipulate Large Graphs},
  author = {John R. Gilbert and Steven Reinhardt and Viral Shah},
  booktitle = {Proceedings of the 2007 IEEE International Conference on Acoustics, Speech, and Signal Processing},
  month = {April},
  year = {2007},
  volume = {4},
  pages = {IV-1201--IV-1204},
  url = {http://gauss.cs.ucsb.edu/publication/gapdt-icassp07.pdf}
}
@inproceedings{gapdt,
  author = {John R. Gilbert and Steve Reinhardt and Viral B. Shah},
  title = {High performance graph algorithms from parallel sparse matrices},
  booktitle = {Applied Parallel Computing. State of the Art in Scientific Computing. 8th International Workshop, PARA 2006.},
  year = {2007},
  pages = {260--269},
  url = {http://gauss.cs.ucsb.edu/publication/gapdt-para06.pdf}
}
@article{ctwatchssca,
  author = {David A. Bader and Kamesh Madduri and John R. Gilbert and Viral Shah and Jeremy Kepner and Theresa Meuse and Ashok Krishnamurthy},
  title = {Designing Scalable Synthetic Compact Applications for Benchmarking High Productivity Computing Systems},
  journal = {Cyberinfrastructure Technology Watch},
  year = {2006},
  month = {Nov},
  url = {http://gauss.cs.ucsb.edu/publication/ctwatch-ssca.pdf}
}
@inproceedings{dsparse,
  author = {Viral Shah and
               John R. Gilbert},
  title = {Sparse Matrices in {M}atlab*{P}: Design and Implementation.},
  booktitle = {High Performance Computing. HiPC 2004.},
  year = {2005},
  pages = {144--155},
  url = {http://gauss.cs.ucsb.edu/publication/dsparse-hipc04.pdf}
}
@article{mpisort,
  author = {David R. Cheng and Alan Edelman and John R. Gilbert and Viral Shah},
  title = {A novel parallel sorting algorithm for contemporary architectures},
  journal = {Submitted to ALENEX06},
  year = {2006},
  url = {http://gauss.cs.ucsb.edu/publication/psort.pdf}
}
@article{ctwatchtmm,
  author = {Andrew Funk and John R. Gilbert and David Mizell and Viral Shah},
  title = {Modelling Programmer Workflows with Timed {M}arkov Models},
  journal = {Cyber Technology Watch},
  year = {2006},
  url = {http://gauss.cs.ucsb.edu/publication/ctwatch-tmm.pdf}
}
@inproceedings{icsehpc05,
  author = {Burton Smith and David Mizell and John Gilbert and Viral Shah},
  title = {Towards a timed {M}arkov process model of software development},
  booktitle = {SE-HPCS '05: Proceedings of the second international workshop on Software engineering for high performance computing system applications},
  year = {2005},
  isbn = {1-59593-117-1},
  pages = {65--67},
  location = {St. Louis, Missouri},
  url = {http://gauss.cs.ucsb.edu/publication/tmm-icsehpc05.pdf},
  publisher = {ACM Press},
  address = {New York, NY, USA}
}

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